仓库/Skill 库

Pyzotero：Zotero API 的 Python 客户端。Pyzotero: a Python client for the Zotero API

一个面向出版物元数据（pubmed、arxiv、medrxiv、biorxiv、chemrxiv）及引用分析的文献计量工具A bibliometrics tool for publication metadata (pubmed, arxiv, medrxiv, biorxiv, chemrxiv) and citation analyses

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从多源抓取学术研究论文Fetch Academic Research Papers from different sources

Semantic Scholar API 的非官方 Python 客户端库Unofficial Python client library for Semantic Scholar APIs.

基于文件、使用 Markdown 的 wikiA file based wiki that uses markdown

Findpapers：帮助研究人员查找相关文献的工具Findpapers: A tool for helping researchers who are looking for related works

用于自动补全 bibtex 文献的 Python 包Python package to autocomplete bibtex bibliographies

科学文献探索器。可运行 Pubmed 或 Semantic Scholar 检索，让用户探索结果论文的高层结构。Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers

一款面向学术写作的原生 macOS Markdown 编辑器，集成了兼容 Zotero 的文献管理器、表格数据库与任务追踪功能。A native macOS Markdown editor for academic writing, featuring an integrated Zotero-friendly bibliography manager, spreadsheet databases, and task tracking.

HCP-MMP1 图谱的体素版本，可在 FSL 中便捷导入。若使用请引用 "Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21"。A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. Please consider citing "Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21" if you use it

通过 Ollama 使用本地 LLM 自动生成文献综述：检索学术数据库、获取全文论文并撰写 APA 第 7 版格式综述；模型在结构上被禁止编造引文，每条引文均逐字核验并按 APA 第 7 版排版。Automated literature reviews using local LLMs via Ollama. Searches academic databases, acquires full-text papers, and writes APA 7th reviews where the model is structurally prevented from fabricating quotes — every quote is verified verbatim and is formated in APA7th.

清理、去重并丰富用于系统综述的 RIS 文献格式文件。Clean, deduplicate, and enrich RIS bibliographic files for systematic reviews.

IFSP - Hortolândia 物理题库Banco de questões de Física do IFSP - Hortolândia

一次查询，覆盖全部学术数据库；每次运行归档井然有序。跨 OpenAlex、ADS、arXiv、INSPIRE、Scopus、Semantic Scholar、Crossref 与 WoS 的可复现、合规文献检索One query. Every scholarly database. A tidy archive of every run. Reproducible, ToS-compliant literature search across OpenAlex, ADS, arXiv, INSPIRE, Scopus, Semantic Scholar, Crossref and WoS.

让研究资源更易于查找、复用与共享，记录可复现研究的资产。（镜像）Making research resources easy to find, reuse, and share, documenting assets for reproducible research. (Mirror)

Bourbaki《数学基础》代数篇第 I–VIII 章 Markdown 版本，带永久 Stacks 风格标签，提供越语/中文/日语翻译及习题解答Bourbaki, Elements of Mathematics: Algebra chapters I-VIII as Markdown, with permanent Stacks-style tags, translations (vi/zh/ja) and worked exercises

The Systematic Review Forge：面向 Zotero 管理和严谨系统文献综述的高性能 CLI（Kitchenham/Wohlin）The Systematic Review Forge: A high-performance CLI for Zotero management and rigorous Systematic Literature Reviews (Kitchenham/Wohlin).

用于系统综述检索的交互式工具：PICO 构建器、数据库语法转换器与邻近算子构建器。Interactive tools for systematic review searching: PICO builder, database syntax converter, and proximity-operator builder.

本仓库包含用于复现论文《Pharmacological treatments for ADHD and comorbid substance use disorder: a systematic review and network meta-analysis》中数据库与分析的 R 代码。This repository holds the R codes for reproducing the databases and analyses in my paper "Pharmacological treatments for ADHD and comorbid substance use disorder: a systematic review and network meta-analysis".

用于系统综述与 meta 分析的 R 脚本，可从 DOI 提取全面的元数据。R scripts for extracting comprehensive metadata from DOIs for systematic reviews and meta-analyses

GMS 6803 临床研究数据科学课程材料，含幻灯片、代码与实操实验，内容涵盖真实世界健康数据、基于 EHR 的队列构建、SQL、Python、统计分析与临床研究中的机器学习Course materials for GMS 6803 Data Science for Clinical Research, including slides, code, and hands-on labs on real-world health data, EHR-based cohort development, SQL, Python, statistical analysis, and machine learning for clinical research.

关于精神病学障碍中迷幻疗法的活体系统综述，基于 Docker 化 Dash 应用与 PostgreSQL 后端构建。Living systematic review of psychedelic therapy in psychiatric disorders. Built as a dockerized Dash app with PostgreSQL backend.

Episciences 引文管理器Episciences citation manager

开源 DBMS 生态的 Reference Quotient 分析与可复现研究流水线。项目列表每月通过 https://github.com/birdflyi/od_label_issue_gen/tree/main/data/database_repo_label_dataframe 中的 csv 文件更新Reference Quotient analysis and reproducible research pipeline for the open-source DBMS ecosystem. The projects list are updated in the csv files in https://github.com/birdflyi/od_label_issue_gen/tree/main/data/database_repo_label_dataframe monthly.

按分支整理的北大课程存档，含精选报告与学术写作作品集。PKU course archives organized by branch, with a curated portfolio of selected reports and academic writing.

自动化 Python 兼容性补丁工具，将 Google Scholar PDF Reader 从 Chromium 移植到基于 Firefox 的浏览器，并使用 IndexedDB 集成自定义离线论文数据库。Automated Python compatibility patcher to port Google Scholar PDF Reader from Chromium to Firefox-based browsers, integrating a custom offline paper database using IndexedDB.

arXiv 论文的端到端推荐引擎：流式接入开放快照，使用量化 ONNX 模型对标题与摘要进行 embedding，构建 FAISS 向量索引，通过 FastAPI 服务提供推荐，并在 Streamlit 面板中交互探索。End-to-end recommendation engine for arXiv research papers: stream an open snapshot, embed titles + abstracts with a quantized ONNX model, build a FAISS vector index, serve recommendations through a FastAPI service, and explore them in a Streamlit dashboard.

SLR Harvester Web 是一个面向 Scopus、PubMed 和 OpenAlex 系统综述的浏览器仪表盘，可持久化记录检索策略、标签与筛选决策，实现完整方法学透明性；注册后可跨设备同步项目，也支持本地文件夹离线使用SLR Harvester Web is a browser-based dashboard for Scopus, PubMed and OpenAlex systematic literature reviews. It persistently logs search strategies, tags, and screening decisions for full methodological transparency. Sign up to sync projects across devices, or work offline with a local folder.

科学写作作品集：摘要、Bulk & scRNA-seq 方法学文档、结果解读与期刊投稿信。Scientific writing portfolio: abstracts, Bulk & scRNA-seq methodology documentation, results interpretation, and journal cover letters

从 Paperimage 实验导出的文献综述论文语料库（含元数据与 PDF）。Literature review paper corpus (metadata + PDFs) exported from Paperimage experiments.

有关基于运动信号的自闭症检测 AI 方法综述的补充数据、检索策略与提取文件。Supplementary data, search strategies, and extraction files for the review on AI methods for autism detection from motion signals.

从学术数据库中采集学术元数据，用于组织文献检索与构建研究参考目录。Harvest scholarly metadata from academic databases to organize literature searches and build research bibliographies.

"Domain-Driven Design in Practice: A Large-Scale Empirical Characterisation of the Open-Source Ecosystem" 的复现包——包含数据收集工具、GPT-4o 语义验证流水线，以及针对所有研究问题的 SQL 查询。Replication package for "Domain-Driven Design in Practice: A Large-Scale Empirical Characterisation of the Open-Source Ecosystem" — includes data collection tools, GPT-4o semantic validation pipeline, and SQL queries for all research questions.